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研究業績

2019.09.11

最新の業績は広島大学研究者総覧をご覧ください。


発表論文 (° 筆頭著者、* 責任著者)

  1. *°So Fujiyoshi, Mateja Dovjak, Janja Vaupotič, Fumito Maruyama. Understanding effects of ventilation on airborne microorganisms in build environments: A perspective.CLIMA 2022 Conference Doi: https://doi.org/10.34641/clima.2022.60 2022.05.06.
  2. Tetsuya Komatsu, Kenji Ohya , Atsushi Ota , Yukiko Nishiuchi , Hirokazu Yano , Kayoko Matsuo, Justice Opare Odoi , Shota Suganuma , Kotaro Sawai , Akemi Hasebe , Tetsuo Asai , Tokuma Yanai , Hideto Fukushi , Takayuki Wada , Shiomi Yoshida , Kentaro Arikawa , Toshihiro Ito , Mikihiko Kawai , Manabu Ato , Anthony D Baughn , Tomotada Iwamoto, and *Fumito Maruyama. Unique genomic sequences in novel Mycobacterium avium subsp. hominissuis lineage enabled fine scale tracing the transmission route during pig movement.bioRxiv. doi: https://doi.org/10.1101/2022.04.04.487006 2022.04.04.
  3. Nishiuchi Y°*, Tateishi Y, Hirano H, Ozeki Y, Yamaguchi T, Miki M, Kitada S, Maruyama F, Matsumoto S. Direct Attachment with Erythrocytes Augments Extracellular Growth of Pathogenic Mycobacteria. Microbiol Spectr. 2022 Apr 27;10(2):e0245421.※日本語英語でのプレスリリースあり
  4. Oshiro Kyoichi°, Wakizaka Yoshikazu, Takano Masayo, Itoi Takayuki, Ohge Hiroki, Koba Kazumi, Yarimizu Kyoko, Fujiyoshi So, Maruyama Fumito*. Fabrication of a new all-in-one microfluidic dielectrophoresis integrated chip and living cell separation. iScience. 25(2): 103776. doi : 10.1016/j.isci.2022.103776 2022 Feb.【IF:5.5】【CI:0】(査読有)※日本語英語でのプレスリリースあり
  5. Kyoichi Oshiro°, Yoshikazu Wakizaka, Masayo Takano, Takayuki Itoi, Hiroki Ohge, Kazumi Koba, Kyoko Yarimizu, So Fujiyoshi, Fumito Maruyama*. Label-Free Separation of Living Bacteria and Eukaryotic Cells by a Novel Microfluidic Dielectrophoresis Integrated Chip System.SSRN Electronic journal. doi:10.2139/ssrn.3915016 2021 Aug.(査読無)
  6. Yarimizu Kyouko, *Mardones Jorge I, Paredes-Mella Javier, Norambuena-Subiabre Luis, Carrano Carl J, *Maruyama Fumito: The effect of iron on Chilean Alexandrium catenella growth and paralytic shellfish toxin production as related to algal blooms.Biometals 35(1): 39–51.doi: 10.1007/s10534-021-00349-2 2022 Feb. (査読有)
  7. °Nakamura Ayane, Nakatani Nobutake, Maruyama Fumito, Fujiyoshi So, Márquez-Reyes Rodrigo, Fernández Ricardo, *Noda Jun: Characteristic of PM2.5 pollution in Osorno, Chile: Ion chromatograph and meteorological data analyses.Atmosphere. 13(2):168. Doi: 10.3390/atmos13020168 (2022 Feb)【IF:2.7】【CI:0】(査読有)
  8. *°Makoto Kokubo, *So Fujiyoshi, Daisuke Ogura, Makiko Nakajima, Ayako Fujieda, Jun Noda, *Fumito Maruyama. Relationship between the Microbiome and Indoor Temperature/Humidity in a Traditional Japanese House with a Thatched Roof in Kyoto, Japan.Diversity. 13(10): 475. doi: 10.3390/d13100475 2021 Oct. (査読有)
  9. *°Daisuke Tanaka, Daisuke Uei, Jun Matsui, Masahiro Matsunaga, Masaaki Morimoto, Fumito Maruyama. Impact of Hinoki Cypress Wood on Diversity of Microflora: A Case Study from Owase City Hall.Diversity. 13(10):473. doi: 10.3390/d13100473 2021 Oct. (査読有)
  10. °Tetsuya Komatsu, °Kenji Ohya, Atsushi Ota, Yukiko Nishiuchi, Hirokazu Yano, Kayoko Matsuo, Justice Opare Odoi, Shota Suganuma, Kotaro Sawai, Akemi Hasebe, Tetsuo Asai, Tokuma Yanai, Hideto Fukushi, Takayuki Wada, Shiomi Yoshida, Kentaro Arikawa, Toshihiro Ito, Mikihiko Kawai, Manabu Ato, Anthony D Baughn, Tomotada Iwamoto, *Fumito Maruyama. Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan.Gigabyte. doi:https://doi.org/10.46471/gigabyte.33. 2021 Nov 12. (査読有)
  11. Kyoko Yarimizu*, So Fujiyoshi, Mikihiko Kawai, Jacquelinne J. Acuña, Joaquin-Ignacio Rilling, Marco Campos, Jonnathan Vilugrón, Henry Cameron, Karen Vergara6, Gonzalo Gajardo, Oscar Espinoza-González, Leonardo Guzmán, Satoshi Nagai, Carlos Riquelme, Milko A. Jorquera, Fumito Maruyama*. A Standardized Procedure for Monitoring Harmful Algal Blooms in Chile by Metabarcoding Analysis.J Vis Exp. 174. doi: 10.3791/62967. 2021 Aug 26. (査読有)
  12. *°So Fujiyoshi, Yukiko Nishiuchi, Fumito Maruyama, Structure of bacterial communities in Japanese-style bathrooms: Comparative sequencing of bacteria in shower water and showerhead biofilms using a portable nanopore sequencer.bioRxiv. DOI: 10.1101/2021.07.14.452346. 2021 Jul 14. (査読無)
  13. *°Hirokazu Yano, Yukiko Nishiuchi, Kentaro Arikawa, Atsushi Ota, Mari Miki, Fumito Maruyama, Hiroshi Kida, Seigo Kitada, *Tomotada Iwamoto. Genome-wide association study reveals putative bacterial risk factors for cavitary Mycobacterium avium complex lung disease.bioRxiv. DOI: 10.1101/2021.07.06.451401. 2021 Jul 6.(査読無)
  14. °Joaquin I. Rilling, Fumito Maruyama, Michael J. Sadowsky, *Jacquelinne J. Acuña,*Milko A. Jorquera. CRISPR loci-PCR as Tool for Tracking Azospirillum sp. Strain B510.Microorganisms. 2021, 9(7), 1351; DOI:10.3390/microorganisms9071351. 2021 JUN 22.(査読有)
  15. °Atsushi Ota, Yukiko Nishiuchi, Noriko Nakanishi, Yoshio Iijima, Tomotada Iwamoto, Ken Osaki, Yoshitoshi Ogura, Atsushi Toyoda, Yutaka Suzuki, Tetsuya Hayashi, Hiroki Ohge, Hirotada Mori, Manabu Ato, *Fumito Maruyama. Diversification of the restriction–modification system of Streptococcus pyogenes through its acquisition of mobile elements.bioRxiv 2020.06.30.179317; doi: https://doi.org/10.1101/2020.06.30.179317 (査読無)
  16. °Tetsuya Komatsu, °Kenji Ohya, Atsushi Ota, Yukiko Nishiuchi, Hirokazu Yano, Kayoko Matsuo, Justice Opare Odoi, Shota Suganuma, Kotaro Sawai, Akemi Hasebe, Tetsuo Asai, Tokuma Yanai, Hideto Fukushi, Takayuki Wada, Shiomi Yoshida, Toshihiro Ito, Kentaro Arikawa, Mikihiko Kawai, Manabu Ato, Anthony D. Baughn, Tomotada Iwamoto, *Fumito Maruyama. Genomic features of Mycobacterium avium subsp. hominissuis isolated from pigs in Japan.bioRxiv. DOI: https://doi.org/10.1101/2021.06.15.447579. 2021 Jun 15.(査読無)
  17. T. Valenzuela, J. I. Rilling, G. Larama, J. J. Acuña, M. Campos, N. G. Inostroza, M. Araya, K. Altamirano, S. Fujiyoshi, K. Yarimizu, *F. Maruyama and M. A. Jorquera. 16S rRNA–based analysis reveals differences in the bacterial community present in tissues of Choromytilus chorus (Mytilidae, Bivalvia) grown in an estuary and a bay in southern Chile.Diversity 2021, 13(5), 209; https://doi.org/10.3390/d13050209. 2021 May 14（査読有）
  18. °*M. Okura, °J-P. Auger, T. Shibahara, G. Goyette-Desjardins, M-R. V. Calsteren, F. Maruyama, M. Kawai, M. Osaki, *M. Segura, *M. Gottschalk, D. Takamatsu. Capsular polysaccharide switching in Streptococcus suis modulates host cell interactions and virulence.Sci Rep. 11(1):6513. DOI: 10.1038/s41598-021-85882-3. 2021 Mar 22. (査読有)
  19. M. Araya, T. Valenzuela, N. G. Inostroza, F. Maruyama, M. A. Jorquera, J. J. Acuña*. Isolation and characterization of cold-tolerant hyper-ACC-degrading bacteria from the rhizosphere, endosphere, and phyllosphere of Antarctic vascular plants. Microoganisms. 8(11):1788. 2020.(査読有)
  20. °*S. Fujiyoshi, K. Yarimizu, Y. Miyashita, J. Rilling, J. J. Acuña, S. Ueki, G. Gajardo, O. Espinoza-González, L. Guzmán, M. A. Jorquera, S. Nagai, * Maruyama. Suitcase Lab: New, portable and deployable equipment for rapid detection of specific harmful algae in Chilean coastal waters. Environ Sci Pollut Res Int. 18:1-12. 2020.(査読有)
  21. °*K. Yarimizu, S. Fujiyoshi, M. Kawai, L. Norambuena-Subiabre, E-K. Cascales, J-I. Rilling, J. Vilugrón, H. Cameron, K. Vergara, J. Morón-López, J. J. Acuña, G. Gajardo, O. Espinoza-González, L. Guzmán3, M. A. Jorquera, S. Nagai, G. Pizarro, C. Riquelme, S. Ueki, * Maruyama. Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile. Int J Environ Res Public Health. 17(20):7642. 2020.(査読有)
  22. °*M. Okura, °J-P. Auger, ° Shibahara, G. Goyette-Desjardins, M-R. V. Calsteren, F. Maruyama, M. Kawai, M. Osaki, *M. Segura, *M. Gottschalk, *D. Takamatsu. Capsular polysaccharide switching in Streptococcus suis modulates host cell interactions and virulence. bioRxiv. 2020.(査読無)
  23. °M. Kawai, A. Ota, T. Takemura, T. Nakai, *F. Maruyama. Continuation and replacement of Vibrio cholerae non-O1 clonal genomic groups isolated from Plecoglossus altivelis fish in freshwaters. Environ Microbiol. 22(10):4473-4484. 2020.(査読有)
  24. °*S. Fujiyoshi, A. Muto-Fujita, * Maruyama. Evaluation of PCR conditions for characterizing bacterial communities with full-length 16S rRNA genes using a portable nanopore sequencer. Sci Rep. 10(1):12580. 2020.(査読有)
  25. °*D. Tanaka, S. Fujiyoshi, Maruyama, M. Goto, S. Koyama, J. Kanatani, J. Isobe, M. Watahiki, A. Sakatoku, S. Kagaya and S. Nakamura. Size resolved characteristics of urban and suburban bacterial bioaerosols in Japan as assessed by 16S rRNA amplicon sequencing. Sci Rep. 10(1):12406. 2020.(査読有)
  26. °M. Yévenes, M. Quiroz, F. Maruyama, M. Jorquera, G. Gajardo*. Vibrio sp. ArtGut-C1, a polyhydroxybutyrate (PHB) producer isolated from the gut of the aquaculture live diet Artemia (Crustacea). Electron J Biotechnol. 49:22-28. 2020. (査読有)
  27. °T. Okubo, M. Yossapol, S. Ikushima, S. Kakooza, E. M. Wampande, T. Asai, S. Tsuchida, K. Ohya, F. Maruyama, J. D. Kabasa, *K. Ushida. Isolation and characterization of antimicrobial-resistant Escherichia coli from retail meats from roadside butcheries in Uganda. Foodborne Pathog Dis. 17(11):666-671. 2020.(査読有)
  28. °A. M. Soliman, F. Maruyama, H. O. Zarad, A. Ota, H. Nariya, T. Shimamoto, and *T. Shimamoto. Emergence of a multidrug-resistant Enterobacter hormaechei clinical isolate from Egypt co-harboring MCR-9 and bla(VIM-4). Microorganisms. 8(4):595. 2020.(査読有)
  29. R.Kinoshita-Daitoku, Y. Ogura, K. Kiga, F. Maruyama, T. Kondo, I. Nakagawa, T. Hayashi, H. Mimuro. Complete genome sequence of Helicobacter pylori strain ATCC 43504, a type strain that can infect Gerbils. Microbiol Resour Announc. 9(18):e00105-20. 2020.(査読有)
  30. °J. M. Walter, F. H. Coutinho, L. Leomil, P. I. Hargreaves, M. E. Campeão, V. V. Vieira, B. S. Silva, G. O. Fistarol, P. S. Salomon, T. Sawabe, S. Mino, M. Hosokawa, H. Miyashita, Maruyama, M. C. van Verk, B. E. Dutilh, C. C. Thompson, *F. L. Thompson. Ecogenomics of the marine benthic filamentous cyanobacterium Adonisia. Microb Ecol. 80(2):249-265. 2020.(査読有)
  31. °I. Takahashi, K. Hosomi, T. Nagatake, H. Tobou, D. Yamamoto, I. Hayashi, Y. Kurashima, S. Sato, N. Shibata, Y. Goto, F. Maruyama, I. Nakagawa, A. Kuwae, A. Abe, *J. Kunisawa and H. Kiyono. Persistent colonization of non-lymphoid tissue-resident macrophages by Stenotrophomonas maltophilia. Int Immunol. 32(2):133-141. 2019.(査読有)
  32. °*M. Okura, Maruyama, A. Ota, T. Tanaka, Y. Matoba, A. Osawa, S. M. Sadaat, M. Osaki, A. Toyoda, Y. Ogura, T. Hayashi, D. Takamatsu. Genotypic diversity of Streptococcus suis and the S. suis-like bacterium Streptococcus ruminantium in ruminants. Vet Res. 50(1):94. 2019.(査読有)
  33. °*H. Yano, H. Suzuki, Maruyama, *T. Iwamoto. The recombination-cold region as an epidemiological marker of recombinogenic opportunistic pathogen Mycobacterium avium. BMC Genomics. 20(1):752. 2019.(査読有)
  34. °K. Arikawa, T. Ichijo, S. Nakajima, Y. Nishiuchi, H. Yano, A. Tamaru, S. Yoshida, F. Maruyama, A. Ota, M. Nasu, D. A. Starkova, I. Mokrousov, O. V. Narvskaya, *T. Iwamotoa. Genetic relatedness of Mycobacterium avium subsp. hominissuis isolates from bathrooms of healthy volunteers, rivers, and soils in Japan with human clinical isolates from different geographical areas. Infect Genet Evol. 74:103923. 2019.(査読有)
  35. °T. Komatsu, K. Ohya, K. Sawai, J. O. Odoi, K. Otsu, A. Ota, T. Ito, M. Kawai, * Maruyama. Draft genome sequences of Mycolicibacterium peregrinum isolated from a pig with lymphadenitis and from soil on the same Japanese pig farm. BMC Res Notes. 12(1):341. 2019.(査読有)
  36. °*Y.  Minato, D. M. Gohl, J. M. Thiede, J. M. Chacón, W. R. Harcombe, F. Maruyama, *A. D. Baughn. Genomewide assessment of Mycobacterium tuberculosis conditionally essential metabolic pathways. mSystems. 4(4):e00070-19. 2019.(査読有)
  37. °* N. Sari, *N. Mertaniasih, Soedarsono, F. Maruyama. Application of serial tests for Mycobacterium tuberculosis detection to active lung tuberculosis cases in Indonesia. BMC Res Notes. 12(1):313. 2019.(査読有)
  38. °Y. Minato, D. M. Gohl, J. M. Thiede, J. M. Chacón, W. R. Harcombe, F. Maruyama, *A. D. Baughn. Genome-wide assessment of Mycobacterium tuberculosis conditionally essential metabolic pathways. biorxiv. 2019.(査読有)
  39. °K. Núñez-Montero, C. Lamilla, M. Abanto, F. Maruyama, M. A. Jorquera, A. Santos, J. Martinez-Urtaza, L. Barrientos*. Antarctic Streptomyces fildesensis So13.3 strain as a promising source for antimicrobials discovery. Sci Rep. 9(1):7488. 2019.(査読有)
  40. °*D. Tanaka, K. Sato, M. Goto, S. Fujiyoshi, F. Maruyama, S. Takato, T. Shimada, A. Sakatoku, K. Aoki, S. Nakamura. Airborne microbial communities at high-altitude and suburban sites in Toyama, Japan suggest a new perspective for bioprospecting. Front Bioeng Biotechnol. 7:12. 2019.(査読有)
  41. °* Y. Furuta, H. Harima, E. Ito, F. Maruyama, N. Ohnishi, K. Osaki, H. Ogawa, D. Squarre, B. Hang’ombe, H. Higashi. Loss of bacitracin resistance due to a large genomic deletion among Bacillus anthracis strains. mSystems. 3(5):e00182-18. 2018.(査読有)
  42. °T. Okubo, °M. Yossapol, F. Maruyama, E. M. Wampande, S. Kakooza, K. Ohya, S. Tsuchida, T. Asai, J. D. Kabasa, *K. Ushida. Phenotypic and genotypic analyses of antimicrobial resistant bacteria in livestock in Uganda. Transboundary Emerg Dis. 66(1):317-326. 2018.(査読有)
  43. °T. Ito,a K. Sawai, M. Kawai, K. Nozaki, K. Otsu, H. Fukushi, *K. Ohya, F. Maruyama. Draft genome sequences of Mycolicibacter senuensis isolate GF74 and Mycobacterium colombiense isolates GF28 and GF76 from a swine farm in Japan. Microbiol Resour Announc. 7(10):e00936-18. 2018.(査読有)
  44. °* L. Nonaka, T. Yamamoto, F. Maruyama, Y. Hirose, Y. Onishi, T. Kobayashi, S. Suzuki, N. Nomura, M. Masuda, *H. Yano. Interplay of a non-conjugative integrative element and a conjugative plasmid in the spread of antibiotic resistance via suicidal plasmid transfer from an aquaculture Vibrio isolate. PLoS One. 13(6):e0198613. 2018.(査読有)
  45. °T. Ito, Maruyama, K. Sawai, K. Nozaki, K. Otsu, *K. Ohya. Draft genome sequence of Mycobacterium virginiense strain GF75, isolated from the mud of a swine farm in Japan. Genome Announc. 6(17):e00362-18. 2018.(査読有)
  46. °Y. Sugimoto, F. Maruyama, *S. Suzuki. Draft genome sequence of a Shewanella halifaxensis strain isolated from the intestine of marine red seabream (Pagrus major), which includes an integrative conjugative element with macrolide resistance genes. Genome Announc. 6(16):e00297-18. 2018.(査読有)
  47. °F. P. Cid, F. Maruyama, K. Murase, S. P. Graether, G. Larama, L. A. Bravo, *M. A. Jorquera. Draft genome sequences of bacteria isolated from the Deschampsia antarctica phyllosphere. Extremophiles. 22(3):537-552. 2018.(査読有)
  48. °* K.Okada, W. Wongboot, S. Chantaroj, W. Natakuathung, A. Roobthaisong, W. Kamjumphol, F. Maruyama, T. Takemura, I. Nakagawa, M. Ohnishi, S. Hamada. Vibrio cholerae embraces two major evolutionary traits as revealed by targeted gene sequencing. Sci Rep. 8(1):1631. 2018.(査読有)
  49. °N. Tajima, Y. Kanesaki, S. Sato, H. Yoshikawa, F. Maruyama, K. Kurokawa, H. Ohta, T. Nishizawa, M. Asayama, *N. Sato. Complete genome sequence of the nonheterocystous cyanobacterium Pseudanabaena sp. ABRG5-3. Genome Announc. 6(6):e01608-17. 2018.(査読有)
  50. °S. Arai, H. Kim, *T. Watanabe, M. Tohya, E. Suzuki, K. Ishida-Kuroki, F. Maruyama, K. Murase, I. Nakagawa, T. Sekizaki. Assessment of pig saliva as a Streptococcus suis reservoir and potential source of infection on farms by use of a novel quantitative polymerase chain reaction assay. Am J Vet Res. 79(9):941-948. 2018.(査読有)
  51. °H. Yano, *T. Iwamoto, Y. Nishiuchi, C. Nakajima, D. Starkova, I. Mokrousov, O. Narvskaya, S. Yoshida, K. Arikawa, N. Nakanishi, K. Osaki, I. Nakagawa, M. Ato, Y. Suzuki, *F. Maruyama. Population structure and local adaptation of MAC lung disease agent Mycobacterium avium subsp. hominissuis. Genome Biol Evol. 9(9):2403-2417. 2017.(査読有)
  52. °*T. Watanabe, M. Shibasaki, Maruyama, T. Sekizaki, I. Nakagawa. Investigation of potential targets of Porphyromonas CRISPRs among the genomes of Porphyromonas species. PLoS One. 12(8):e0183752. 2017.(査読有)
  53. °S. Tsuchida, ° Maruyama, Y. Ogura, A. Toyoda, T. Hayashi, M. Ohkuma, *K. Ushida. Genomic characteristics of Bifidobacterium thermacidophilum pig isolates and wild boar isolates reveal the unique presence of a putative mobile genetic element with tetW for pig farm isolates. Front Microb. 8:1540. 2017.(査読有)
  54. °T. Takemura, °K. Murase, ° Maruyama, °T. L. Tran, A. Ota, I. Nakagawa, D. T. Nguyen, T. C. Ngo, T. H. Nguyen, A. Tokizawa, M. Morita, M. Ohnishi, B. M. Nguyen, *T. Yamashiro. Genetic diversity of environmental Vibrio cholerae O1 strains isolated in Northern Vietnam. Infect Genet Evol. 54:146-151. 2017.(査読有)
  55. °M. Okura, T. Nozawa, T. Watanabe, K. Murase, I. Nakagawa, D. Takamatsu, M. Osaki, T. Sekizaki, M. Gottschalk, S. Hamada, * Maruyama. A locus encoding variable defence systems against invading DNA identified in Streptococcus suis. Genome Biol Evol. 9(4):1000-1012. 2017.(査読有)
  56. °A. Roobthaisong, C. Aikawa, T. Nozawa, Maruyama, *I. Nakagawa. YvqE and CovRS of Group A Streptococcus play a pivotal role in viability and phenotypic adaptations to multiple environmental stresses. PLoS One. 12(1):e0170612. 2017.(査読有)
  57. °H. Kachi, °N. Maruyama, * Maruyama, T. Shiba, T. Watanabe, A. Goda, K. Murase, Y. Michi, Y. Takeuchi, Y. Izumi, S. Yamaguchi, I. Nakagawa. Active microbiota show specific correlationships in peri-implantitis and periodontitis. J Stomatol Soc. 84:25-35. 2017.(査読有)
  58. °F. Maruyama and *S. Ueki. Evolution and phylogeny of large DNA viruses, Mimiviridae and Phycodnaviridae including newly characterized Heterosigma akashiwo virus. Front Microbiol. 7:1942. 2016.(査読有)
  59. °T. Kulkarni, C. Aikawa, T. Nozawa, K. Murase, * Maruyama, I. Nakagawa. DNA-based culture-independent analysis detects the presence of group a streptococcus in throat samples from healthy adults in Japan. BMC Microbiol. 16(1):237. 2016.(査読有)
  60. °T. Shiba, °T. Watanabe, H. Kachi, T. Koyanagi, N. Maruyama, K. Murase, *Y. Takeuchi, * Maruyama, Y. Izumi, I. Nakagawa. Distinct interacting core taxa in co-occurrence networks enable discrimination of polymicrobial oral diseases with similar symptoms. * press releaseあり Sci Rep. 6:30997. 2016.(査読有)
  61. °M. Tohya, T. Watanabe, * Maruyama, S. Arai, A. Ota, T. B. T. Athey, N. Fittipaldi, I. Nakagawa, *T. Sekizaki. Comparative genome analyses of Streptococcus suis isolates from endocarditis demonstrate persistence of dual phenotypic clones. PloS One. 11(7):e0159558. 2016.(査読有)
  62. °*M. A. Jorquera, Maruyama, A. V. Ogram, O. U. Navarrete, L. M. Lagos, N. G. Inostroza, J. J. Acuña, J. I. Rilling, M. D. L. L. Mora. Erratum to: Rhizobacterial community structures associated with native plants grown in Chilean extreme environments. Microb Ecol. 73(1):253. 2017.(査読無)
  63. °*M. A. Jorquera, Maruyama, A. V. Ogram, O. U. Navarrete, L. M. Lagos, N. G. Inostroza, J. J. Acuña, J. I. Rilling, M. D. L. L. Mora. Rhizobacterial community structures associated with native plants grown in Chilean extreme environments. Microb Ecol. 72(3):633-646. 2016.(査読有)
  64. °L. M. Lagos, J. J. Acuña, Maruyama, A. Ogram, M. D. L. L. Mora, *M. A. Jorquera. Effect of phosphorus addition on total and alkaline phosphomonoesterase-harboring bacterial populations in ryegrass rhizosphere microsites. Biol Fertil Soils. 52(7):1007-1019. 2016.(査読有)
  65. °*N. Tajima, K. Saito, S. Sato, Maruyama, M. Ichinomiya, S. Yoshikawa, K. Kurokawa, H. Ohta, S. Tabata, A. Kuwata, N. Sato. Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms). Curr Genet. 62(4):887-896. 2016.(査読有)
  66. °*T. Kubota, T. Kobayashi, T. Nunoura, Maruyama, S. Deguchi. Enantioselective utilization of D-amino acids by deep-sea microorganisms. * press releaseあり Front Microbiol. 7:511. 2016.(査読有)
  67. °T. Furusawa, *H. Iwano, H. Higuchi, M. Usui, Maruyama, I. Nakagawa, H. Yokota, Y. Tamura. Complete genome sequences of broad-host-range Pseudomonas aeruginosa bacteriophages ΦR18 and ΦS12-1. Genome Announc. 4(3):e00041-16. 2016.(査読有)
  68. °T. Wada, ° Maruyama, T. Iwamoto, S. Maeda, T. Yamamoto, I. Nakagawa, S. Yamamoto, *N. Ohara. Deep sequencing analysis of the heterogeneity of seed and commercial lots of the bacillus Calmette-Guérin (BCG) tuberculosis vaccine substrain Tokyo-172. * press releaseあり Sci Rep. 5:17827. 2015.(査読有)
  69. °H. Kato, °H. Mori, Maruyama, A. Toyoda, K. Ohshima, R. Endo, G. Fuchu, M. Miyakoshi, A. Dozono, Y. Ohtsubo, Y. Nagata, M. Hattori, A. Fujiyama, K. Kurokawa, *M. Tsuda. Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance. DNA Res. 22(6):413-424. 2015.(査読有)
  70. °*K. Ushida, S. Tsuchida, Y. Ogura, A. Toyoda, Maruyama. Domestication and cereal feeding developed domestic pig-type intestinal microbiota in animals of Suidae. Anim Sci J. 87(6):835-841. 2015.(査読有)
  71. °Y. Matsumura, H. Al-saari, K. Kuga, Y. Inohara, S. Mino, S. Nakagawa, Maruyama, Y. Ogura, T. Hayashi, K. Kurokawa, T. Sawabe, *T. Sawabe. Identification of a gene cluster responsible for hydrogen evolution in Vibrio tritonius strain AM2 with transcriptional analyses. Int J Hydrogen Energy. 40(30):9137-9146. 2015.(査読有)
  72. °*K. Okada, W. Natakuathung, M. Na-Ubol, A. Roobthaisong, W. Wongboot, Maruyama, I. Nakagawa, S. Chantaroj, S. Hamada. Characterization of 3 megabase-sized circular replicons from Vibrio cholerae. Emerg Infect Dis. 21(7) :1262-1263. 2015.(査読有)
  73. °K. Minegishi, °T. Watanabe, A. Furukawa, K. Uchida, Y. Suzuki, T. Akashi, * Maruyama, I. Nakagawa, *Y. Eishi. Genetic profiles of Propionibacterium acnes and identification of a unique transposon with novel insertion sequences in sarcoid and non-sarcoid isolates. Sci Rep. 5:9832. 2015.(査読有)
  74. °*L. Nonaka, Maruyama, S. Suzuki, M. Masuda. Novel macrolide-resistance genes, mef(C) and mph(G), carried by plasmids from Vibrio and Photobacterium isolated from sediment and seawater of a coastal aquaculture site. *editor’s choice Let Appl Microbiol. 61(1):1-6. 2015.(査読有)
  75. °A. Endo, T. Watanabe, N. Ogata, T. Nozawa, C. Aikawa, S. Arakawa, * Maruyama, Y. Izumi, I. Nakagawa. Comparative genome analysis and identification of competitive and cooperative interactions in a polymicrobial disease. ISME J. 9(3):629-642. 2014.(査読有)
  76. °N. Maruyama, * Maruyama, *Y. Takeuchi, C. Aikawa, Y. Izumi, I. Nakagawa. Intraindividual variation in core microbiota in peri-implantitis and periodontitis. Sci Rep. 4:6602. 2014.(査読有)
  77. °*R. Nomoto, Maruyama, S. Ishida, M. Tohya, T. Sekizaki, R. Osawa. Reappraisal of the taxonomy of Streptococcus suis serotypes 20, 22 and 26: Streptococcus parasuis sp. nov. Int J Syst Evol Microbiol. 65(Pt2):438-443. 2014.(査読有)
  78. °B. Haobam, °*T. Nozawa, A. Minowa-Nozawa, M. Tanaka, S. Oda, T. Watanabe, C. Aikawa, Maruyama, I. Nakagawa. Rab17-mediated recycling endosomes contribute to autophagosome formation in response to Group A Streptococcus invasion. Cell Microbiol. 16(12):1806-1821. 2014.(査読有)
  79. °*T. Segawa, °S. Ishii, N. Ohte, A. Akiyoshi, A. Yamada, Maruyama, Z. Li, °Y. Hongoh, N. Takeuchi. The nitrogen cycle in cryoconites: naturally occurring nitrification-denitrification granules on a glacier. Environ Microbiol. 16(10) :3250-3262. 2014.(査読有)
  80. °L. M. Lagos, O. U. Navarrete, Maruyama, D. E. Crowley, F. P. Cid, M. L. Mora, *M. A. Jorquera. Bacterial community structures in rhizosphere microsites of ryegrass (Lolium perenne var. Nui) as revealed by pyrosequencing Biol Fertil Soils. 50(8):1253-1266. 2014.(査読有)
  81. °K. Hori, Maruyama, T. Fujisawa, T. Togashi, N. Yamamoto, M. Seo, S. Sato, T. Yamada, H. Mori, N. Tajima, T. Moriyama, M. Ikeuchi, M. Watanabe, H. Wada, K. Kobayashi, M. Saito, T. Masuda, Y. Sasaki-Sekimoto, K. Mashiguchi, K. Awai, M. Shimojima, S. Masuda, M. Iwai, T. Nobusawa, T. Narise, S. Kondo, H. Saito, R. Sato, M. Murakawa, Y. Ihara, Y. Oshima-Yamada, K. Ohtaka, M. Satoh, K. Sonobe, M. Ishii, R. Ohtani, M. Kanamori-Sato, R. Honoki, D. Miyazaki, H. Mochizuki, J. Umetsu, K. Higashi, D. Shibata, Y. Kamiya, N. Sato, Y. Nakamura, S. Tabata, S. Ida, K. Kurokawa, *H. Ohta. Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation. * press releaseあり Nature Commun. 5:3978. 2014.(査読有)
  82. °*K. Okada, M. Na Ubol, W. Natakuathung, A. Roobthaisong, Maruyama, I. Nakagawa, S. Chantaroj, S. Hamada. Comparative genomic characterization of a Thailand-Myanmar isolate, MS6, of Vibrio cholerae O1 El Tor, which is phylogenetically related to a “US Gulf Coast” clone. PLoS One. 9(6):e98120. 2014.(査読有)
  83. °*L. Nonaka, Maruyama, Y. Onishi, T. Kobayashi, Y. Ogura, T. Hayashi, S. Suzuki, M. Masuda. Various pAQU plasmids possibly contribute to disseminate tetracycline resistance gene tet(M) among marine bacterial community. Front Microbiol. 5:152. 2014.(査読有)
  84. °*N. Tajima, S. Sato, Maruyama, K. Kurokawa, H. Ohta, S. Tabata, K. Sekine, T. Moriyama, *N. Sato. Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum. J Plant Res. 127(3):389-397. 2014.(査読有)
  85. °N. Ohnishi, Maruyama, H. Ogawa, H. Kachi, S. Yamada, D. Fujikura, I. Nakagawa, M. B. Hang’ombe, Y. Thomas, A. S. Mweene, *H. Higashi. Genome sequence of a Bacillus anthracis outbreak strain from Zambia, 2011. Genome Announc. 2(2):e00116-14. 2014.(査読有)
  86. ˚M. Okura, C. Lachance, M. Osaki, T. Sekizaki, Maruyama, T. Nozawa, I. Nakagawa, S. Hamada, C. Rossignol, M. Gottschalk, *D. Takamatsu. Development of a two-step multiplex PCR assay for typing of capsular polysaccharide synthesis gene clusters of Streptococcus suis. * press releaseあり J Clin Microbiol. 52(5):1714-1719. 2014.(査読有)
  87. °A. Goda, ˚ Maruyama, *Y. Michi, I. Nakagawa, K. Harada. Analysis of the factors affecting the formation of the microbiome associated with chronic osteomyelitis of the jaw. Clin Microbiol Infect. 20(5):O309-O317. 2014.(査読有)
  88. ˚H. Mori, ˚F. Maruyama, ˚H. Kato, A. Toyoda, A. Dozono, Y. Ohtsubo, Y. Nagata, A. Fujiyama, *M. Tsuda, *K. Kurokawa. Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes. DNA Res. 21(2):217-227. (査読有)
  89. *T. Sawabe, Y. Ogura, Y. Matsumura, G. Feng, AKM R. Amin, S. Mino, S. Nakagawa, T. Sawabe, R. Kumar, Y. Fukui, M. Satomi, R. Matsushima, F. L. Thompson, B. G. Gil, R. Christen, Maruyama, K. Kurokawa, T. Hayashi. Corrigendum: Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov. Front Microbiol. 5:583. 2014.(査読無)
  90. ˚*T. Sawabe, Y. Ogura, Y. Matsumura, G. Feng, AKM R. Amin, S. Mino, S. Nakagawa, T. Sawabe, R. Kumar, Y. Fukui, M. Satomi, R. Matsushima, F. L. Thompson, B. G. Gil, R. Christen, Maruyama, K. Kurokawa, T. Hayashi. Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov. Front Microbiol. 4:414. 2013.(査読有)
  91. °*S.  Masuda, K. Hori, F. Maruyama, S. Ren, S. Sugimoto, N. Yamamoto, H. Mori, T. Yamada, S. Sato, S. Tabata, H. Ohta, K. Kurokawa. Whole-genome sequence of the purple photosynthetic bacterium Rhodovulum sulfidophilum strain W4. Genome Announc. 1(4):e00577-13. 2013.(査読有)
  92. °T. Watanabe, T. Nozawa, C. Aikawa, A. Amano, * Maruyama, I. Nakagawa. CRISPR regulation of intraspecies diversification by limiting IS transposition and intercellular recombination. Genome Biol Evol. 5(6):1099-1114. 2013.(査読有)
  93. °M. Okura, *D. Takamatsu, *F. Maruyama, T. Nozawa, I. Nakagawa, M. Osaki, T. Sekizaki, M. Gottschalk, Y. Kumagai, S. Hamada. Genetic analysis of capsular polysaccharide synthesis gene clusters from all serotypes of Streptococcus suis: potential mechanisms for generation of capsular variation. Appl Environ Microbiol. 79(8):2796-2806. 2013.(査読有)
  94. °K. Minegishi, °C. Aikawa, A. Furukawa, T. Watanabe, T. Nakano, Y. Ogura, Y. Ohtsubo, K. Kurokawa, T. Hayashi, *F. Maruyama, I. Nakagawa, Y. Eishi. Complete genome sequence of a Propionibacterium acnes isolate from a sarcoidosis patient. Genome Announc. 1(1):e00016-12. 2013.(査読有)
  95. °田島直幸、佐藤修正、丸山史人、黒川顕、太田啓之、田畑哲之、関根康介、森山崇、*佐藤直樹. 単細胞紅藻チノリモ (Porphyridium purpureum)の葉緑体ゲノム解析. 光合成研究 22(3):156─159. (査読有)
  96. °*Y. Ohtsubo, F. Maruyama, H. Mitsui, Y. Nagata, M. Tsuda. Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader. J Bacteriol. 194(24):6970-6971. 2012.(査読有)
  97. °* A. Jorquera, N. Saavedra, F. Maruyama, A. E. Richardson, D. E. Crowley, R. D. C. Catrilaf, E. J. Henriquez, M. D. L. L. Mora. Phytate addition to soil induces changes in the abundance and expression of Bacillus ß-propeller phytase genes in the rhizosphere. FEMS Microbiol Ecol. 83(2):352-360. 2012.(査読有)
  98. °T. Nozawa, C. Aikawa, A. Goda, Maruyama, S. Hamada, *I. Nakagawa. The small GTPases Rab9A and Rab23 function at distinct steps in autophagy during Group A Streptococcus infection. *editor’s choice Cell Microbiol. 14(8):1149-1165. 2012.(査読有)
  99. °C. Aikawa, N. Furukawa, T. Watanabe, K. Minegishi, A. Furukawa, Y. Eishi, K. Oshima, K. Kurokawa, M. Hattori, K. Nakano, *F. Maruyama, I. Nakagawa, T. Ooshima. Complete genome sequence of the serotype k Streptococcus mutans strain LJ23. J Bacteriol. 194(10):2754-2755. 2012.(査読有)
  100. °*L. Nonaka, Maruyama, M. Miyamoto, M. Miyakoshi, K. Kurokawa, M. Masuda. Novel conjugative transferable multiple drug resistance plasmid pAQU1 from Photobacterium damselae subsp. damselae isolated from marine aquaculture environment. Microbes Environ. 27(3):263-272. 2012.(査読有)
  101. °A. Aoki, Y. Shibata, S. Okano, Maruyama, A. Amano, I. Nakagawa, *Y. Abiko. Transition metal ions induce carnosinase activity in PepD-homologous protein from Porphyromonas gingivalis. Microb Pathog. 52(1):17-24. 2012.(査読有)
  102. °N. Tajima, S. Sato, Maruyama, N. Kaneko, N. V. Sasaki, K. Kurokawa, H. Ohta, Y. Kanesaki, H. Yoshikawa, S. Tabata, M. Ikeuchi, *N. Sato. Genomic structure of the cyanobacterium Synechocystis sp. PCC 6803 strain GT-S. DNA Res. 18(5):393-399. 2011.(査読有)
  103. °T. Watanabe, ° Maruyama, T. Nozawa, A. Aoki, S. Okano, Y. Shibata, K. Oshima, K. Kurokawa, M. Hattori, *I. Nakagawa, Y. Abiko. Complete genome sequence of the bacterium Porphyromonas gingivalis TDC60, which causes periodontal disease. J Bacteriol. 193(16):4259-4260. 2011.(査読有)
  104. °T. Nozawa, °N. Furukawa, C. Aikawa, T. Watanabe, B. Haobam, K. Kurokawa, * Maruyama, I. Nakagawa. CRISPR inhibition of prophage acquisition in Streptococcus pyogenes. PLoS One. 6(5):e19543. 2011.(査読有)
  105. °C. Aikawa, * Maruyama, I. Nakagawa. The dawning era of comprehensive transcriptome analysis in cellular microbiology. Front Microbiol. 1:118. 2010.(査読有)
  106. °H. Mori, Maruyama, *K. Kurokawa. VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences. BMC Bioinfo. 11:332. 2010.(査読有)
  107. °I. Takahashi, Maruyama, Y. Kurashima, Y. Goto, T. Obata, I. Nakagawa, *H. Kiyono. Commensal Proteobacteria in colonic CD11b+ cells induce intestinal T cell responses. Int Immunol. 22:supplement, Thursday iv9. 2010.(査読無)
  108. °A. Sakurai, Maruyama, J. Funao, T. Nozawa, C. Aikawa, N. Okahashi, S. Shintani, S. Hamada, *T. Ooshima, I. Nakagawa. Specific behavior of intracellular Streptococcus pyogenes that has undergone autophagic degradation is associated with bacterial streptolysin O and host small G proteins Rab5 and Rab7. J Biol Chem. 285(29):22666-22675. 2010.(査読有)
  109. °C. Aikawa, T. Nozawa, Maruyama, K. Tsumoto, S. Hamada, *I. Nakagawa. Reactive oxygen species induced by Streptococcus pyogenes invasion trigger apoptotic cell death in infected epithelial cells. Cell Microbiol. 12(6):814-830. 2010.(査読有)
  110. ° Maruyama, M. Kobata, K. Kurokawa, K. Nishida, A. Sakurai, K. Nakano, R. Nomura, S. Kawabata, T. Ooshima, K. Nakai, M. Hattori, S. Hamada, *I. Nakagawa. Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content. BMC Genomics. 10:358. 2009.(査読有)
  111. ° Maruyma, T. Nozawa, C. Aikawa, A. Sakurai, *I. Nakagawa. Cost effective DNA sequencing and template preparation from bacterial colonies and plasmids. J Biosci Bioeng. 107(4):471-473. 2009.(査読有)
  112. ° Maruyama, T. Tani, T. Kenzaka, N. Yamaguchi, *M. Nasu. Application of real-time long and short polymerase chain reaction for sensitive monitoring of the fate of extracellular plasmid DNA introduced into river waters. Microbes Environ. 23(3):229-236. 2008.(査読有)
  113. °A. Sakurai, N. Okahashi, Maruyama, T. Ooshima, S. Hamada, *I. Nakagawa. Streptococcus pyogenes degrades extracellular matrix in chondrocytes via MMP-13. Biochem Biophys Res Commun. 373(3):450-454. 2008.(査読有)
  114. °T. Kobayashi, °*L. Nonaka, Maruyama, S. Suzuki. Molecular evidence for the ancient origin of the ribosomal protection protein that mediates tetracycline resistance in bacteria. J Mol Evol. 65(3):228-235. 2007.(査読有)
  115. ° Maruyama, K. Tani, T. Kenzaka, N. Yamagushi, *M. Nasu. Quantitative determination of free-DNA uptake in river bacteria at the single-cell level by in situ rolling-circle amplification. Appl Environ Microbiol. 72(9):6248-6256. 2006.(査読有)
  116. ° Maruyama, T. Kenzaka, N. Yamaguchi, K. Tani, *M. Nasu. Visualization and enumeration of bacteria carrying a specific gene sequence by in situ rolling circle amplification. Appl Environ Microbiol. 71(12):7933-7940.　2005.(査読有)
  117. ° Maruyama, N. Yamaguchi, T. Kenzaka, K. Tani, *M. Nasu. Simplified sample preparation using frame spotting method for direct counting of bacteria by fluorescence microscopy. J Microbiol Methods. 59(3):427-431.　2004.(査読有)
  118. ° Maruyama, T. Kenzaka, N. Yamaguchi, K. Tani, *M. Nasu. Detection of bacteria carrying the stx2 gene by in situ loop-mediated isothermal amplification. Appl Environ Microbiol. 69(8):5023-5028. 2003.(査読有)

総説

  1. ° R. Gil, J. J. Acuña, S. Fujiyoshi, D. Tanaka, J. Noda, F. Maruyama, M. A. Jorquera*. Airborne bacterial communities of outdoor environments and their associated influencing factors. Environ Int. 145:106156. 2020.(査読有)
  2. °* A. Jorquera, S. P. Graether, F. Maruyama. Editorial: bioprospecting and biotechnology of extremophiles. Front Bioeng Biotechnol. 7:204. 2019.(査読有)
  3. °J.I. Rillinga, J.J. Acuña, P. Nannipieri, F. Cassan, Maruyama, M.A. Jorquera*. Current opinion on methods and perspectives for tracking and monitoring of plant growth‒promoting bacteria. Soil Biol Biochem. 130:205-219. 2019.(査読有)
  4. °T. Ito, M. Okura, * Maruyama. Acquired and innate immunity in prokaryotes define their evolutionary story. DNA traffic in the environment, Springer. 47-75. 2019.(査読有)
  5. °芝多佳彦、藤吉奏、須藤毅顕、竹内康雄、*丸山史人. 口腔内における複合微生物感染症のホロゲノム動態を時空間的に理解する. 最新医学　73(4):509-522. 2018.(査読無)
  6. °S. Fujiyoshi, D. Tanaka, * Maruyama. Transmission of airborne bacteria across built environments and its measurement standards: a review. Front Microbiol. 8:2336. 2017.(査読有)
  7. °*芝多佳彦、竹内康雄、渡辺孝康、小柳達郎、丸山緑子、加地博一、村瀬一典、丸山史人、中川一路、和泉雄一. インプラント周囲炎と歯周炎の違いを科学する 〜口腔細菌生態系の解明へ、メタトランスクリプトーム解析からのアプローチ〜. 歯界展望 129(5):823-826. 2017.(査読無)
  8. °*Y. Nishiuchi, T. Iwamoto, * Maruyama. Infection sources of a common nontuberculous mycobacterial pathogen, Mycobacterium avium complex. Front Med (Lausanne). 4:27. 2017.(査読有)
  9. °藤吉奏、村瀬一典、*丸山史人. マイクロバイオーム研究からホロビオーム研究への新展開(特集 細菌叢解析の光と影). 生体の科学 68(2):97-101. 2017.(査読無)
  10. °* Maruyama, T. Watanabe, *I. Nakagawa. Streptococcus pyogenes, Basic Biology to Clinical Manifestations. NIH NCBI Bookshelf http://www.ncbi.nlm.nih.gov/books/NBK333426/ 2016.(査読有)
  11. °渡辺孝康、村瀬一典、中川一路、*丸山史人. 原核生物の獲得免疫に見られる新機構から紐解かれてきたゲノム進化 化学療法の領域 31(11):118-128. 2015.(査読無)
  12. °L. M. Lagos, Maruyama, P. Nannipieri, M. L. Mora, A. Ogram, *M. A. Jorquera. Current overview on the study of bacteria in the rhizosphere by modern molecular techniques: a mini-review. J Soil Sci Plant Nutr. 15(2):504-523. 2015.(査読有)
  13. °相川知宏、丸山史人、*中川一路. CRISPR/Casシステム：微生物における新規機能とゲノム編集適用例. 乳酸菌学会誌 26(1):14-21. 2015.(査読有)
  14. °渡辺孝康、中川一路、*丸山史人. 原核生物の新規な獲得免疫機構CRISPR/Casシステム. 化学と生物 51(7):441-444. 2013.(査読有)
  15. °森宙史、丸山史人、*黒川顕. 第2章メタゲノムデータベース. メタゲノム解析技術の最前線. Metagenomics: a new frontier of bacterial community researches. CMC出版 東京. pp.42-53. 2010.(査読無)
  16. °森宙史、丸山史人、*黒川顕. 第8章 メタゲノムインフォマティクス. 難培養微生物研究の最新技術 II —ゲノム解析を中心とした最前線と将来展望— Current Technology and Perspectives for Yet-uncultivated Microbial Resources. CMC出版 東京. pp.82-91. 2010.(査読無)
  17. °*M. A. Jorquera, O. Martinez, Maruyama, P. Marschner, M. M. D. L. Mora. Current and future biotechnological applications of bacterial phytases and phytase-producing bacteria. Microbes Environ. 23(3):182-191. 2008.(査読有)
  18. °F. Maruyama, K. Tani, *M. Nasu. Dynamics and contributions to horizontal gene transfer of extracellular DNA in natural ecosystems. Journal of environmental biotechnology. 4(2):131-137. 2005.(査読有)

招待講演

  1. Fumito Maruyama. “Past, current, future academic research and industry-government collaboration” A special research presentation, Universidad de La Frontera. 2019.12.10. Temuco, Chile.
  2. 丸山史人　“衛生微生物学的安全性評価に資する環境常在性病原細菌ゲノムデータ利用の展望”, 酪農学園大学 応用獣医学特別講義. 2019.11.28. 北海道.
  3. Fumito Maruyama. “Resumen general y avance del Proyecto MACH”, Taller Actividades SATREPS y otros Proyectos en Magallanes. 9.9. Punta Arenas, Chile.
  4. Fumito Maruyama. “Resumen general y avance del Proyecto MACH”, Cooperation Tecnica del Gobierno de Japon Introduccion a Proyecto MACH (Monitoreo de Algas en Chile). 9.3. Castro, Chile.
  5. 丸山史人　“DNA伝搬防御システムから病原細菌のゲノム多様化を考える”, 2019年度(令和元年度) 国立遺伝学研究所研究会 「環境中のDNA循環」プログラム. 2019.8.8. 静岡県.
  6. 丸山史人 “抗酸菌研究における環境遺伝生態学的アプローチと新感染症対策の観点から”,環境衛生学演習におけるゼミ生特別指導, 酪農学園大学獣医学類. 2019.6.23. 北海道.
  7. 丸山史人 “環境遺伝生態学の基礎とトピックス” 千葉大, 微生物工学特論, 千葉大学園芸学部. 2019.6.21. 千葉.
  8. 丸山史人. “インドネシアにおける抗酸菌と薬剤耐性菌に関わる国際共同研究の現状と展望”. 第4回環境薬剤耐性菌研究の最前線（科研費16H01782研究集会）, LaMer研究集会, 第1回愛媛大学東南アジア環境健康研究ユニット研究集会. 2019.5.31. 愛媛.
  9. Fumito Maruyama. “Overview of SATREPS-MACH project” CREAN Seminar. 2019.5.8. Puerto Montt, Chile.
  10. Fumito Maruyama, Milko Jorquera, Leonardo Guzman, Gonzalo Gajardo (moderators).”JCC Members meeting for outreach strategy and activity “Development of harm algal bloom monitoring methods and forecast system for sustainable aquaculture and coastal fisheries in Chile.” (MACH)”. 2019.5.3. Osorno, Chile.
  11. Fumito Maruyama. “Satreps project Chile-Japan: Predicting algal blooms in Chile”. 1st Workshop “Biotechnological Challenges and Improvements for sustainable aquaculture in the X region”. Osorno, Chile. 2019.5.3.
  12. Fumito Maruyama. “Molecular research of infectious diseases”. 2019.3.27. Makassar, Indonesia.
  13. 丸山史人　“ゲノム疫学・衛生微生物学的アプローチにより見出された浴室細菌叢の特性”. 第2回 感染症診断と治療におけるゲノム解析. 2019.3.15. 神奈川.
  14. 丸山史人　“南米チリにおける科学技術協力の現場とその目指す道筋”. 平成30年度西大和学園高等学校SGH生徒研究発表会. 2019.2.23. 奈良.
  15. 丸山史人、藤吉奏　“屋内エアロゾル発生源である浴室環境の微生物群集構造解析”. 第11回大気バイオエアロゾルシンポジウム2.20-21 長野（通常）
  16. 丸山史人 “Bacterial 16S rRNA gene profiling by portable DNA sequencer from shower water, shower head, bathtub inlet in Japan”. 第30回日本臨床微生物学会総会. 2019.2.2. 東京.
  17. Fumito Maruyama. “Kyoto University and SATREPS Project”. International Talk, Genomics and Applied Microbiology for Biodegradation and Bioproducts, Universidad Técnica Federico Santa María. 2018.11.26. Valparaiso, Chile.
  18. Fumito Maruyama. “Population structure and local adaptation of MAC lung disease agent Mycobacterium avium and their surrounding microbial community”. International Symposium: “Advances in Environmental Microbiology and Microbial Biotechnology” Núcleo Científico Tecnológico de la Universidad de La Frontera BIOREN-UFRO. 2018.12.6-7. Pucon, Chile.
  19. Fumito Maruyama. “Kyoto University and SATREPS Project”. Bioinformatics Meeting, CENTRO AUSTRAL DE TECHNOLOGIA GENOMICA, University of Magallanes. 2018.12.30. Punta Arenas, Chile.
  20. 丸山史人、藤吉奏　“エアロゾル発生源となる浴室環境の微生物群集構造解析”. 第6回大気エアロゾル 「シミュレーションと観測からのアジアダスト解析」11.9. 北海道.
  21. 丸山史人 “～国際的な感染症対策～環境遺伝生態学的アプローチがもたらす新感染症対策と地球規模課題対応国際科学技術協力プログラム”. 国際的感染症対策セミナー 酪農学園大学. 2019.11.8. 北海道
  22. Fumito Maruyama. “Bioinformatics and The Role in Tracing Evolution and Transmission of Mycobacteria”. Workshop of Universitas Airlangga. 2018.10.18th. Surabaya, Indonesia.
  23. Fumito Maruyama. “Population structure and local adaptation of MAC lung disease agent Mycobacterium avium hominissuis”. The 1st International Scientific Meeting on Clinical Microbiology and Infectious Diseases (ISM-CMID). 2018.10.11-14th. Surabaya, Indonesia.
  24. 丸山史人 “フィールドマイクロバイオームからハウスマイマイクロバイオームまでの道のり” 第91回日本生化学会. 2018.9.25. 京都.
  25. Fumito Maruyama. “Kyoto University and SATREPS Project”. Seminar in The Laboratory of Technological Research in Pattern Recognition (LITRP), Scientific-Technological Park, Catholic University of Maule. 2018.8.30. Talca, Chile
  26. Fumito Maruyama. “Past, current, future of the SATREPS project, Monitoring of algae in Chile”. Lecture in University of Chile. 2018.8.7. Santiago, Chile
  27. Fumito Maruyama. “Past, current, future of the SATREPS project, Monitoring of algae in Chile”. Lecture in University of Concepction. 2018.8.6. Concepcion, Chile
  28. Fumito Maruyama. From “genome analysis of environmental pathogens” to “development of harmful algal bloom monitoring methods and forecast system for sustainable aquaculture and coastal fisheries in Chile”. CENTRO DE INVESTIGACIÓN EN SUELOS VOLCÁNICOS PROGRAMA DE CHARLAS CISVo. 8.2. Valdivia, Chile
  29. Fumito Maruyama. “Population structure and local adaptation of MAC lung disease agent Mycobacterium avium hominissuis”. 352 I Planetary Protection Center of Excellence: Capabilities for ISS Research. 2018.7.26. NASA, Los Angeles, USA.
  30. Fumito Maruyama. From “genome analysis of environmental pathogens” to “development of harmful algal bloom monitoring methods and forecast system for sustainable aquaculture and coastal fisheries in Chile”. A Special Summer Presentation. 2018.7.24. Minnesota, USA
  31. Fumito Maruyama. “Population structure and local adaptation of MAC lung disease agent Mycobacterium avium hominissuis”. Microbiology and Immunology, Special Seminar. 2018.7.23. Minnesota, USA.
  32. 丸山史人 “メタゲノムから見出された家畜に拡がる薬剤耐性遺伝子の分布とその特徴” 続・環境薬剤耐性菌研究の最前線. 2018.6.9. 山形.
  33. 丸山史人 “環境遺伝生態学的立場からの新規細菌感染症対策を提案する” 結核予防会結核研究所セミナー. 2018.5.24. 東京.
  34. 丸山史人 “ゲノム科学が拓く新たなワンヘルス研究への道筋” 家畜感染症フォーラム. 2018.3.19. 岐阜.
  35. Fumito Maruyama “Towards state-of-art one-health approach to prevent infectious diseases” Annual Meeting in Awaji Systems and Synthetic Bacterial biology. 2018.3.12-14. Hyogo.
  36. 丸山史人 “先端型フィールドマイクロバイオーム研究構想” Nanopore Day, Kyoto. 2018.3.8. 京都.
  37. 丸山史人 “ワンヘルスに基づく感染症防止策の提案” 2017年度 第8回 産と学をつなぐSENRIの会. 2018.1.25. 大阪.
  38. 丸山史人 “若手研究者が超大型研究費を獲得する方法～チリとの国際共同研究を例として～” 金沢大学がん進展制御研究所, 金沢大学新学術創生研究機構 異分野融合セミナー. 2017.9.27. 石川.
  39. 丸山史人 “大型国際共同研究費を獲得するには?:チリとの共同研究を例として” 富山大学理学部生物圏環境科学セミナー. 2017.9.26. 富山.
  40. 丸山史人 “自然環境における薬剤耐性病原細菌研究のための基盤構築” 岐阜大学獣医学研究科 感染症セミナー. 2017.7.25. 岐阜.
  41. 丸山史人 “養殖環境における薬剤耐性病原細菌研究のための基盤構築” 環境薬剤耐性菌研究の最前線 第2回科研費H1601782研究集会, 第9回LaMer共催研究集会. 2017.7.15. 愛媛.
  42. 丸山史人 “チリにおける持続可能な養殖確立に向けた赤潮早期警戒のための研究基盤の構築” 奈良先端科学技術大学院大学 バイオサイエンス研究科セミナー. 2017.7.12. 奈良.
  43. 丸山史人 “獲得免疫機構に着目した病原細菌のゲノム進化に関する研究—そして次に何を目指すのか—” 第11回日本ゲノム微生物学会. 2017.3.3. 神奈川.
  44. Fumito Maruyama 1. “How can bacterial community keep its resilience?”, and 2. “What we should learn from Vibrio in the normal environments”. Strengthening postgraduate training capacities for innovation and science competition Acuácas the University of Antofagasta. 2016.12.12-13. Antofagasta, Chile.
  45. Fumito Maruyama “The earth Vibrio project: collections from normal to extreme environments: the NEXT” International Seminar on Applied Microbial Ecology. 2016.12.5. Temuco, Chile.
  46. Fumito Maruyama “Robustness of soil bacterial community against chemical disturbance” PGPR Latin America. 2016.11.28. Pucon, Chile.
  47. Fumito Maruyama “Vibrio, Algal bloom, and Next” Graduate course: Comparative microbial genomics and Taxonomy. UFRJ. 2016.11.21. Rio de Janeiro, Brazil.
  48. 丸山史人 “医科微生物生態学の創成に関する研究—そして次に何を目指すのか—” 日本微生物生態学会. 2016.10.23. 神奈川.
  49. 丸山史人 “ビブリオプロジェクト—地球規模での水の衛生微生物学的安全性を保証する” 第二回 LaMer共同利用研究集会「遺伝子汚染の新しい視点: 環境中の抗菌剤耐性菌・耐性遺伝子の動態解明とそのリスク評価へむけて」. 2016.7.27. 愛媛.
  50. 丸山史人 “複合感染症に見られるゲノム・メタゲノムレベルでの共創機構” 兵庫医科大学 平成28年度特別講義 第1回. 2016.5.17. 兵庫.
  51. 丸山史人 “最も複雑な土壌の微生物集団と恒常性の維持” 岡山大学資源植物科学研究所拠点共同研究ワークショップ「微小生態系の構成原理~Wet/Dry双方からのアプローチによる理解と制御の試み」. 2016.2.15. 岡山.
  52. 丸山史人 “微生物群集に「たおやかさ」をもたらすダークマター” 長崎大 第８８回 先端新興感染症病態制御学特論. 2016.2.12. 長崎.
  53. Fumito Maruyama “Strategy of group A streptococci to adapt inside host cell” International Symposium on Intracellular Pathogens. 2016.2.5. Yamaguchi, Japan.
  54. 丸山史人 “環境コレラ菌 (Vibrio cholerae) ゲノム多様性とゲノム疫学” 京都府立大学生命環境科学研究科 マケレレ大学獣医畜産防疫学部交流協定締結記念, ウガンダセミナー. 2016.1.31. 京都.
  55. Fumito Maruyama “What we learn from evolutionary strategies of bacteria in the point of view of original niche.”, “What makes micro-ecosystem robust revealed by metagenomic information” International Seminar on Applied Microbial Ecology. 2015.12.16. Temuco, Chile.
  56. Fumito Maruyama “Evolution of Phage Selfishness by CRISPR in Diverse Bacteria and Archaea” 5th international workshop: Advances in Science and Technology of Bioresources. 2015.12.2-4. Pucon, Chile.
  57. 丸山史人 “微生物生態学的アプローチから紐解く「病原」細菌ゲノムの適応戦略” 第6回愛媛微生物学ネットワークフォーラム. 2015.10.24. 愛媛.
  58. 丸山史人 “ファージと獲得免疫システムCRISPRの割り切れない関係とその生態学的意義” 第30回微生物生態学会. 2015.10.20. 茨城.
  59. Fumito Maruyama “Similarity, dissimilarity and robustness of micro-ecosystem in intractable polymicrobial infectious disease” International Seminars: Brazil-Japan cooperation in microbiology and marine sciences. 2015.9.30. Rio de Janeiro, Brazil.
  60. 丸山史人、中川一路. “非遺伝子領域CRISPRを用いた高解像度タイピング法の現状と展望” 第158回日本獣医学会. 2015.9.8. 青森.
  61. Fumito Maruyama “Robustness of micro-ecosystem in intractable polymicrobial infectious disease” 2015年日本数理生物学会/日中韓数理生物学コロキウム合同大会. 2015.8.26. 京都.
  62. 丸山史人 “CRISPRから病原細菌の進化を捉える” 国立感染症研究所学友会セミナー. 2015.6.5. 東京.
  63. 丸山史人 “A群レンサ球菌の宿主細胞内適応機構” 第88回 日本細菌学会総会. 2015.3.26. 岐阜.
  64. 丸山史人 “自然生態から病原細菌を捉えてわかる展望” 京都大学野生動物研究センター異分野ゼミ. 2015.3.24. 京都.
  65. 丸山 史人 “完全ゲノム配列決定経験者がPacBio RS Ⅱを使って思うところ” 第9回日本ゲノム微生物学会. 2015.3.7. 兵庫.
  66. Fumito Maruyama, I. Nakagawa. “Competitive and cooperative microbial interactions support polymicrobial diseases predicted from comparative genome analysis” CER International Workshop: Microbes beyond borders. 2015.3.5. Kyoto University, Shiga.
  67. Fumito Maruyama “A polymicrobial disease caused by novel competitive and cooperative microbial interactions predicted from comparative genome analysis” 2nd international symposium: soil, plant and microorganism. 2014.11.24-26. Pucon, Chile.
  68. Fumito Maruyama “Diversification mechanism of intracelluarly invading bacteria revealed by comparative genomic analysis of multiple isolates” 長崎大学ベトナム拠点セミナー. 2014.10.7. Hanoi, Vietnam.
  69. 丸山史人 “Genome information clarifies the backstage of polymicrobial infection” 感染症特別講演会 共催:北海道大学人獣共通感染症リサーチセンター, 日本細菌学会北海道支部. 2014.7.25. 北海道.
  70. 丸山史人 “細菌ゲノム・細菌叢解析より紐解く慢性感染症の実態と新展開” カルピス株式会社. 2014.5.23. 神奈川.
  71. 丸山史人 “微生物相互作用解析を通じたヒトの疾患および健康とのつながりに関する研究とその展望” ライオン大学院講演会, 株式会社ライオン平井研究所. 2014.5.7. 東京.
  72. 丸山史人 “多次元的解析により見えつつあるA群レンサ球菌の新常識” 平成26年度第1回環保研セミナー, 神戸市環境保険研究所. 2014.4.16. 兵庫.
  73. 丸山史人 “口腔病原細菌ゲノム情報から紐解く恒常性破綻機構解析” 第87回 日本細菌学会総会. 2014.3.26-28. 東京.
  74. Fumito Maruyama “Diversification mechanism of group A streptococcus revealed by comparative genomic analysis of multiple isolates” The 12th Japan-Korea International Symposium on Microbiology. 2014.3.24-25. Tokyo, Japan.
  75. 丸山史人 “我々の生活における環境微生物学入門” 千葉大学, 2年生講義, 千葉大学園芸学部. 2014.1.10. 千葉.
  76. 丸山史人 “原核生物における獲得免疫の種特異的ゲノム進化・生態学的意義” 第90回 東北大学生態適応セミナー. 2013.12.18. 宮城.
  77. 丸山史人 “投稿論文A to Z” 微生物生態学会若手交流会. 2013.11.22. 鹿児島.
  78. 丸山史人 “原核生物における獲得免疫であるCRISPRの基礎と真核ゲノム編集技術への応用の現状” ヤクルト中央研究所. 2013.9.26. 東京.
  79. 丸山史人 “CRISPR/Casシステム:その生物における意味とゲノム編集” The 115th RIKEN BRC SEMINAR. 理化学研究所. 2013.9.25. 千葉.
  80. 丸山史人 “バクテリア多株ゲノム解析から見えた種特異的進化機構” 第38回GCOE談話会. 東京大学医科学研究所. 2013.4.12. 東京.
  81. 丸山史人 “高速シーケンサーの基礎、現場、そして細菌ゲノム解析手法” 大阪大学微生物病研究所タイ国際研究センターセミナー. 2011.10.21. Bangkok, Thailand.
  82. Fumito Maruyama “Species-specific strategy of genome diversification in genus streptococci via prophage acquisition and its defense system” International Union of Microbiological Societies 2011 Congress. 2011.9.6-10. Hokkaido, Japan.
  83. 丸山史人 “レンサ球菌属ゲノム情報に基づく種特異的進化機構の解析” 第83回日本細菌学会総会, The Rising Generation’s Forum. 2010.3.27-29. 神奈川．
  84. 丸山史人 “バクテリアゲノム情報に基づく種特異的進化機構〜ヒト病原細菌を例として〜” 北海道大学低温科学研究所内セミナー. 2010.1.31. 北海道.
  85. 丸山史人 “次世代シーケンサーの基礎と細菌学への応” 第3回細菌学・若手コロセウム. 2009.10.26-28. 宮崎.

学会ポスター発表

  1. Fumito Maruyama, So Fujiyoshi, Daisuke Tanaka. “Bacterial bioaerosols at Yokohama and Toyama in Japan”. 1st. ISME-LATIN AMERICA CONGRESS Technical University Federico Santa Maria Valparaiso, Chile 11 – 13 September 2019.
  2. So Fujiyoshi, Fumito Maruyama. “Specific difference in bacterial composition between shower-head biofilm and shower water in Japanese bathroom”. 1st. ISME-LATIN AMERICA CONGRESS Technical University Federico Santa Maria Valparaiso, Chile 11 – 13 September 2019.
  3. Hirokazu Yano, Tomotada Iwamoto, Yukiko Nishiuchi, Maruyama Fumito. “Population Structure and Local Adaptation of MAC Lung Disease Agent Mycobacterium avium subsp. Hominissuis” Microbiology of the Built Environment, Gordon Research Conference. 2018.7.15-20. ME, United States.
  4. So Fujiyoshi, Ai Muto, Fumito Maruyama. “Bacterial 16S rRNA gene profiling by portable DNA sequencer from shower water, shower head, bathtub inlet in Japan”. Microbiology of the Built Environment, Gordon Research Conference. 2018.7.15-20. ME, United States.
  5. 藤吉奏、丸山史人. “携帯型DNAシーケンサーを用いた生活環境の細菌群集構造解析” 環境微生物系学会合同大会2017. 2017.8.29-8.31. 宮城

国内、国外口頭発表

  1. 河合 幹彦, 大田 篤, 竹村 太地郎, 中井 敏博, 丸山 史人. “Genome-based inspection if transplantation of juvenile ayu is the cause of spread of Vibrio cholerae” 第14回日本ゲノム微生物学会年会. 2020.3.19. 名古屋.（新型コロナウイルスの影響によりキャンセル）
  2. Hirokazu Yano, Fumito Maruyama, Yukiko Nishiuchi, Tomotada Iwamoto. “Local diversification of MAC lung disease agent Mycobacterium avium” 日米医学協力計画 抗酸菌専門部会 第52回日米合同部会. 2020.3.19-20. 沖縄. （新型コロナウイルスの影響によりキャンセル）
  3. 丸山史人.　“チリにおける持続可能な沿岸漁業及び養殖に資する赤潮早期予測システムの構築と運用の現状” 令和元年度 漁場環境保全関係研究開発推進会議 赤潮・貝毒部会. 2019.12.4. 広島.
  4. 矢野大和、丸山史人、西内由紀子、岩本朋忠. “肺MAC症原因菌Mycobacterium aviumのゲノム疫学”　第４回抗酸菌研究会.　2019.11.16. 東京.
  5. 大田篤、西内由紀子、丸山史人.　“プロファージによりもたらされるA群レンサ球菌メチローム、制限修飾系の多様性” 2019年環境ウイルス部会. 2019.11.2. 京都.
  6. 藤吉奏, 丸山史人.　“細菌群集構造から見えた日本のシャワー水とシャワーヘッドバイオフィルムの関係” 第13回日本ゲノム微生物学会. 2019.3.6-8. 東京.